Course catalog

19400001

WiSe 18/19: Algorithmen und Datenstrukturen

Knut Reinert

Comments

This lecture deals with: Exact and approximative string matching, dynamic programming and scoring schemata, finite automata and formal languages, pairwise und multiple alignment, multiple string matching, basics of Markov Chains und Hidden Markov Models, algorithms for fast search in sequence data bases.

In the exercises the above topics will be deepened, and techniques of analysis and evidence will be practised.

There is an associated practical course "Algorithmen und Datenstrukturen" (19401330). Please check there for further information!

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Suggested reading

Generelle Bücher/Basic reading: Neil C. Jones, Pavel A. Pevzner: An Introduction to Bioinformatics Algorithms. MIT Press, Cambridge, MA, 2004. ISBN 0-262-10106-8 R. Durbin, S. Eddy, A. Krogh, G. Mitchison: Biological sequence analysis. Cambridge University Press, 1998. ISBN 0-521-62971-3 David B. Mount: Bioinformatics. Sequence and Genome Analysis. Cold Spring Harbor Laboratory Press, New York, 2001. ISBN 0-87969-608-7 Chao, Zhang: Sequence comparison, Theory and Methods: Springer, ISBN: 978-1-85800-319-4 close

16 Class schedule

Additional appointments

Thu, 2019-01-10 16:00 - 18:00

Einsicht Review

Location:
A6/SR 031 Seminarraum (Arnimallee 6)

Thu, 2019-01-24 16:00 - 18:00

Review Nachprüfung

Location:
A6/SR 009 Seminarraum (Arnimallee 6)

Fri, 2019-04-12 16:00 - 18:00

Nachklausur

Location:
T9/SR 005 Übungsraum (Takustr. 9)

Thu, 2019-05-16 10:00 - 12:00

Nachklausureinsicht

Location:
A6/017 Frontalunterrichtsraum (Bioinf) (Arnimallee 6)

Regular appointments

Thu, 14:00 - 16:00 16 Class schedule

Thu, 2018-10-18 14:00 - 16:00

Lecturers:
Univ.-Prof. Dr. Knut Reinert

Location:
A3/Hs 001 Hörsaal (Arnimallee 3-5)

Thu, 2018-10-25 14:00 - 16:00

Lecturers:
Univ.-Prof. Dr. Knut Reinert

Location:
A3/Hs 001 Hörsaal (Arnimallee 3-5)

Thu, 2018-11-01 14:00 - 16:00

Lecturers:
Univ.-Prof. Dr. Knut Reinert

Location:
A3/Hs 001 Hörsaal (Arnimallee 3-5)

Thu, 2018-11-08 14:00 - 16:00

Lecturers:
Univ.-Prof. Dr. Knut Reinert

Location:
A3/Hs 001 Hörsaal (Arnimallee 3-5)

Thu, 2018-11-15 14:00 - 16:00

Lecturers:
Univ.-Prof. Dr. Knut Reinert

Location:
A3/Hs 001 Hörsaal (Arnimallee 3-5)

Thu, 2018-11-22 14:00 - 16:00

Lecturers:
Univ.-Prof. Dr. Knut Reinert

Location:
A3/Hs 001 Hörsaal (Arnimallee 3-5)

Thu, 2018-11-29 14:00 - 16:00

Lecturers:
Univ.-Prof. Dr. Knut Reinert

Location:
A3/Hs 001 Hörsaal (Arnimallee 3-5)

Thu, 2018-12-06 14:00 - 16:00

Lecturers:
Univ.-Prof. Dr. Knut Reinert

Location:
A3/Hs 001 Hörsaal (Arnimallee 3-5)

Thu, 2018-12-13 14:00 - 16:00

Lecturers:
Univ.-Prof. Dr. Knut Reinert

Location:
A3/Hs 001 Hörsaal (Arnimallee 3-5)

Thu, 2018-12-20 14:00 - 16:00

Lecturers:
Univ.-Prof. Dr. Knut Reinert

Location:
A3/Hs 001 Hörsaal (Arnimallee 3-5)

Thu, 2019-01-10 14:00 - 16:00

Lecturers:
Univ.-Prof. Dr. Knut Reinert

Location:
A3/Hs 001 Hörsaal (Arnimallee 3-5)

Thu, 2019-01-17 14:00 - 16:00

Lecturers:
Univ.-Prof. Dr. Knut Reinert

Location:
A3/Hs 001 Hörsaal (Arnimallee 3-5)

Thu, 2019-01-24 14:00 - 16:00

Lecturers:
Univ.-Prof. Dr. Knut Reinert

Location:
A3/Hs 001 Hörsaal (Arnimallee 3-5)

Thu, 2019-01-31 14:00 - 16:00

Lecturers:
Univ.-Prof. Dr. Knut Reinert

Location:
A3/Hs 001 Hörsaal (Arnimallee 3-5)

Thu, 2019-02-07 14:00 - 16:00

Lecturers:
Univ.-Prof. Dr. Knut Reinert

Location:
A3/Hs 001 Hörsaal (Arnimallee 3-5)

Thu, 2019-02-14 14:00 - 16:00

Lecturers:
Univ.-Prof. Dr. Knut Reinert

Location:
A3/Hs 001 Hörsaal (Arnimallee 3-5)
Hörsaal/Thielallee 67 (Thielallee 67)

Back to list of modules

Location: A3/Hs 001 Hörsaal (Arnimallee 3-5)

Schedule: Do 14:00-16:00, zusätzliche Termine siehe LV-Details

Class starts on: 2018-10-18

Course language: German

Contact hours: 2

Number of participants: 80

Limited attendance: No

Attendance required: No

Modules where this course belongs: