Course catalog

19400001

WiSe 19/20: AlDaBi

Knut Reinert

Comments

This lecture deals with: Exact and approximative string matching, dynamic programming and scoring schemata, finite automata and formal languages, pairwise und multiple alignment, multiple string matching, basics of Markov Chains und Hidden Markov Models, algorithms for fast search in sequence data bases.

In the exercises the above topics will be deepened, and techniques of analysis and evidence will be practised.

There is an associated practical course "Algorithmen und Datenstrukturen" (19401330). Please check there for further information!

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Suggested reading

Generelle Bücher/Basic reading:

Neil C. Jones, Pavel A. Pevzner: An Introduction to Bioinformatics Algorithms. MIT Press, Cambridge, MA, 2004. ISBN 0-262-10106-8
R. Durbin, S. Eddy, A. Krogh, G. Mitchison: Biological sequence analysis. Cambridge University Press, 1998. ISBN 0-521-62971-3
David B. Mount: Bioinformatics. Sequence and Genome Analysis. Cold Spring Harbor Laboratory Press, New York, 2001. ISBN 0-87969-608-7
Chao, Zhang: Sequence comparison, Theory and Methods: Springer, ISBN: 978-1-85800-319-4

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15 Class schedule

Additional appointments

Fri, 2019-12-06 16:00 - 18:00

Review

Lecturers:
Prof. Dr.-Ing. Knut Reinert

Location:
A3/Hs 001 Hörsaal (Arnimallee 3-5)

Wed, 2020-09-30 10:00 - 12:00

Nachklausur

Lecturers:
Prof. Dr.-Ing. Knut Reinert

Location:
A3/Hs 001 Hörsaal (Arnimallee 3-5)

Regular appointments

Thu, 14:00 - 16:00 Algorithmen und Datenstrukturen 15 Class schedule

Thu, 2019-10-17 14:00 - 16:00

Algorithmen und Datenstrukturen

Lecturers:
Prof. Dr.-Ing. Knut Reinert

Location:
Hs B (Raum B.004, 100 Pl.) (Arnimallee 22)

Thu, 2019-10-24 14:00 - 16:00

Algorithmen und Datenstrukturen

Lecturers:
Prof. Dr.-Ing. Knut Reinert

Location:
Hs B (Raum B.004, 100 Pl.) (Arnimallee 22)

Thu, 2019-10-31 14:00 - 16:00

Algorithmen und Datenstrukturen

Lecturers:
Prof. Dr.-Ing. Knut Reinert

Location:
Hs B (Raum B.004, 100 Pl.) (Arnimallee 22)

Thu, 2019-11-07 14:00 - 16:00

Algorithmen und Datenstrukturen

Lecturers:
Prof. Dr.-Ing. Knut Reinert

Location:
Hs B (Raum B.004, 100 Pl.) (Arnimallee 22)

Thu, 2019-11-21 14:00 - 16:00

Algorithmen und Datenstrukturen

Lecturers:
Prof. Dr.-Ing. Knut Reinert

Location:
Hs B (Raum B.004, 100 Pl.) (Arnimallee 22)

Thu, 2019-11-28 14:00 - 16:00

Algorithmen und Datenstrukturen

Lecturers:
Prof. Dr.-Ing. Knut Reinert

Location:
Hs B (Raum B.004, 100 Pl.) (Arnimallee 22)

Thu, 2019-12-05 14:00 - 16:00

Algorithmen und Datenstrukturen

Lecturers:
Prof. Dr.-Ing. Knut Reinert

Location:
Hs B (Raum B.004, 100 Pl.) (Arnimallee 22)

Thu, 2019-12-12 14:00 - 16:00

Algorithmen und Datenstrukturen

Lecturers:
Prof. Dr.-Ing. Knut Reinert

Location:
Hs B (Raum B.004, 100 Pl.) (Arnimallee 22)

Thu, 2019-12-19 14:00 - 16:00

Algorithmen und Datenstrukturen

Lecturers:
Prof. Dr.-Ing. Knut Reinert

Location:
Hs B (Raum B.004, 100 Pl.) (Arnimallee 22)

Thu, 2020-01-09 14:00 - 16:00

Algorithmen und Datenstrukturen

Lecturers:
Prof. Dr.-Ing. Knut Reinert

Location:
Hs B (Raum B.004, 100 Pl.) (Arnimallee 22)

Thu, 2020-01-16 14:00 - 16:00

Algorithmen und Datenstrukturen

Lecturers:
Prof. Dr.-Ing. Knut Reinert

Location:
Hs B (Raum B.004, 100 Pl.) (Arnimallee 22)

Thu, 2020-01-23 14:00 - 16:00

Algorithmen und Datenstrukturen

Lecturers:
Prof. Dr.-Ing. Knut Reinert

Location:
Hs B (Raum B.004, 100 Pl.) (Arnimallee 22)

Thu, 2020-01-30 14:00 - 16:00

Algorithmen und Datenstrukturen

Lecturers:
Prof. Dr.-Ing. Knut Reinert

Location:
Hs B (Raum B.004, 100 Pl.) (Arnimallee 22)

Thu, 2020-02-06 14:00 - 16:00

Algorithmen und Datenstrukturen

Lecturers:
Prof. Dr.-Ing. Knut Reinert

Location:
Hs B (Raum B.004, 100 Pl.) (Arnimallee 22)

Thu, 2020-02-13 14:00 - 16:00

Algorithmen und Datenstrukturen

Lecturers:
Prof. Dr.-Ing. Knut Reinert

Location:
Hs B (Raum B.004, 100 Pl.) (Arnimallee 22)

Back to list of modules

Location: Hs B Hörsaal/Arnim 22

Schedule: Do 14:00-16:00, zusätzliche Termine siehe LV-Details

Class starts on: 2019-10-17

Course language: German

Contact hours: 2

ECTS credits: 6 (for exchange students)

Number of participants: 80

Limited attendance: Yes

Attendance required: No

Relevant semester: 3

Modules where this course belongs: