Course catalog

19400001

WiSe 22/23: AlDaBi

Knut Reinert

Comments

This lecture deals with: Exact and approximative string matching, dynamic programming and scoring schemata, finite automata and formal languages, pairwise und multiple alignment, multiple string matching, basics of Markov Chains und Hidden Markov Models, algorithms for fast search in sequence data bases.

In the exercises the above topics will be deepened, and techniques of analysis and evidence will be practised.

There is an associated practical course "Algorithmen und Datenstrukturen" (19401330). Please check there for further information!

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Suggested reading

Generelle Bücher/Basic reading:

Neil C. Jones, Pavel A. Pevzner: An Introduction to Bioinformatics Algorithms. MIT Press, Cambridge, MA, 2004. ISBN 0-262-10106-8
R. Durbin, S. Eddy, A. Krogh, G. Mitchison: Biological sequence analysis. Cambridge University Press, 1998. ISBN 0-521-62971-3
David B. Mount: Bioinformatics. Sequence and Genome Analysis. Cold Spring Harbor Laboratory Press, New York, 2001. ISBN 0-87969-608-7
Chao, Zhang: Sequence comparison, Theory and Methods: Springer, ISBN: 978-1-85800-319-4

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16 Class schedule

Regular appointments

Thu, 14:00 - 16:00 Algorithmen und Datenstrukturen 16 Class schedule

Thu, 2022-10-20 14:00 - 16:00

Algorithmen und Datenstrukturen

Lecturers:
Prof. Dr.-Ing. Knut Reinert

Location:
T9/SR 005 Übungsraum (Takustr. 9)

Thu, 2022-10-27 14:00 - 16:00

Algorithmen und Datenstrukturen

Lecturers:
Prof. Dr.-Ing. Knut Reinert

Location:
T9/SR 005 Übungsraum (Takustr. 9)

Thu, 2022-11-03 14:00 - 16:00

Algorithmen und Datenstrukturen

Lecturers:
Prof. Dr.-Ing. Knut Reinert

Location:
T9/SR 005 Übungsraum (Takustr. 9)

Thu, 2022-11-10 14:00 - 16:00

Algorithmen und Datenstrukturen

Lecturers:
Prof. Dr.-Ing. Knut Reinert

Location:
T9/SR 005 Übungsraum (Takustr. 9)

Thu, 2022-11-17 14:00 - 16:00

Algorithmen und Datenstrukturen

Lecturers:
Prof. Dr.-Ing. Knut Reinert

Location:
T9/SR 005 Übungsraum (Takustr. 9)

Thu, 2022-11-24 14:00 - 16:00

Algorithmen und Datenstrukturen

Lecturers:
Prof. Dr.-Ing. Knut Reinert

Location:
T9/SR 005 Übungsraum (Takustr. 9)

Thu, 2022-12-01 14:00 - 16:00

Algorithmen und Datenstrukturen

Lecturers:
Prof. Dr.-Ing. Knut Reinert

Location:
T9/SR 005 Übungsraum (Takustr. 9)

Thu, 2022-12-08 14:00 - 16:00

Algorithmen und Datenstrukturen

Lecturers:
Prof. Dr.-Ing. Knut Reinert

Location:
T9/SR 005 Übungsraum (Takustr. 9)

Thu, 2022-12-15 14:00 - 16:00

Algorithmen und Datenstrukturen

Lecturers:
Prof. Dr.-Ing. Knut Reinert

Location:
T9/SR 005 Übungsraum (Takustr. 9)

Thu, 2023-01-05 14:00 - 16:00

Algorithmen und Datenstrukturen

Lecturers:
Prof. Dr.-Ing. Knut Reinert

Location:
T9/SR 005 Übungsraum (Takustr. 9)

Thu, 2023-01-12 14:00 - 16:00

Algorithmen und Datenstrukturen

Lecturers:
Prof. Dr.-Ing. Knut Reinert

Location:
T9/SR 005 Übungsraum (Takustr. 9)

Thu, 2023-01-19 14:00 - 16:00

Algorithmen und Datenstrukturen

Lecturers:
Prof. Dr.-Ing. Knut Reinert

Location:
T9/SR 005 Übungsraum (Takustr. 9)

Thu, 2023-01-26 14:00 - 16:00

Algorithmen und Datenstrukturen

Lecturers:
Prof. Dr.-Ing. Knut Reinert

Location:
T9/SR 005 Übungsraum (Takustr. 9)

Thu, 2023-02-02 14:00 - 16:00

Algorithmen und Datenstrukturen

Lecturers:
Prof. Dr.-Ing. Knut Reinert

Location:
T9/SR 005 Übungsraum (Takustr. 9)

Thu, 2023-02-09 14:00 - 16:00

Algorithmen und Datenstrukturen

Lecturers:
Prof. Dr.-Ing. Knut Reinert

Location:
T9/SR 005 Übungsraum (Takustr. 9)

Thu, 2023-02-16 14:00 - 16:00

Algorithmen und Datenstrukturen

Lecturers:
Prof. Dr.-Ing. Knut Reinert

Location:
T9/SR 005 Übungsraum (Takustr. 9)

Back to list of modules

Location: T9/SR 005 Übungsraum (Takustr. 9)

Schedule: Do 14:00-16:00

Class starts on: 2022-10-20

Course language: German

Contact hours: 2

Limited attendance: No

Attendance required: No

Relevant semester: 3

Modules where this course belongs: